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Polymerase chain reaction

In short, Polymerase Chain Reaction (PCR) is a laboratory technique used to make millions of copies of a specific DNA segment. Scientists often need to study DNA, but biological samples (like a drop of blood or a swab from a cheek) usually contain a very tiny amount of genetic material—too little to see or analyze directly. PCR solves this “needle in a haystack” problem by amplifying the DNA until there is a large enough quantity to work with.

How PCR Works: The Three-Step Cycle

Diagram showing the three stages of a PCR cycle: Denaturation, Annealing, and Extension.

PCR doesn’t require complex machinery to “cut and paste” DNA; instead, it uses temperature changes to control the reaction. The process happens inside a thermal cycler and repeats roughly 25 to 40 times.

  1. Denaturation (The “Unzip”)

The reaction mixture is heated to approximately 95°C. At this high temperature, the hydrogen bonds holding the two strands of the DNA double helix together break, causing the DNA to separate into two single strands.

  1. Annealing (The “Prime”)

The temperature is lowered to between 50°C and 65°C. This allows short pieces of custom-built DNA called primers to bind (anneal) to the specific target sequences on the single-stranded DNA. These primers act as “bookmarks,” telling the enzyme exactly where to start copying.

  1. Extension (The “Build”)

The temperature is raised to about 72°C. An enzyme called Taq polymerase (a heat-stable DNA polymerase) grabs onto the primers and begins adding nucleotides to the strand. It builds a new complementary strand of DNA, effectively doubling the amount of target DNA.