Dot Plot Generator
Generate dot plots to visualize sequence homology, repeats, and inversions between two sequences.
Motif Scanner
Scan DNA sequences for regulatory motifs, restriction sites, and custom IUPAC patterns on both strands.
Primer Designer
Design PCR primers for DNA sequences with Tm, GC%, and self-complementarity analysis.
Restriction Mapper
Map restriction enzyme recognition sites in DNA sequences with fragment analysis and visualization.
Sequence Aligner
Perform global (Needleman-Wunsch) and local (Smith-Waterman) sequence alignments with configurable scoring.
Codon Usage Analyzer
Analyze codon usage bias with RSCU, GC3 content, and ENC calculations.
K-mer Composition Analyzer
Analyze k-mer frequencies in nucleotide sequences with adjustable k size.
ORF Finder
Find open reading frames in all 6 frames with adjustable minimum length.
Sequence Statistics Calculator
Calculate GC content, GC skew, molecular weight, and other sequence statistics for DNA or RNA sequences.
